PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00099.1_g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 291aa    MW: 32862.5 Da    PI: 4.2293
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00099.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.85.4e-1516100390
                              EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEE CS
                       B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFk 83 
                               v +p+d  + + l +p +f  ++  +     +k++t+++ +g++W++kl+  k++g    + + +GWk+ vk+ +Lk g+f+ F+
  Rsa1.0_00099.1_g00006.1  16 RVYLPND--SGDDLEIPVSFS-SYlpS---SVPKDVTVRSINGNVWKLKLR--KRRGDpakFSMVDGWKRIVKDEDLKGGEFLAFE 93 
                              5554444..445699*****8.77443...35679***************5..44444456************************* PP

                              E-SSSEE CS
                       B3  84 ldgrsef 90 
                              +dg++ f
  Rsa1.0_00099.1_g00006.1  94 FDGSRLF 100
                              9885444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-1810110IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.2E-1710107IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.19612108IPR003340B3 DNA binding domain
CDDcd100175.60E-1512105No hitNo description
SMARTSM010191.9E-1514108IPR003340B3 DNA binding domain
PfamPF023621.5E-121698IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-5188288IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-8188285IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MKKGDSCVDR LPKFFRVYLP NDSGDDLEIP VSFSSYLPSS VPKDVTVRSI NGNVWKLKLR  60
KRRGDPAKFS MVDGWKRIVK DEDLKGGEFL AFEFDGSRLF DFCIYGQGTC KKLGKPTEIE  120
EDESDDDDDD DDDVIVINDE DDDDGDDVEA DNDDVEANDE DVDVNDEDLD VDDGMEADDD  180
DDRKVLDDPD SPSFTVILNP KKKSQLLIPS HIMKDYNIHF TERIAIIDPL VAKFGTLERK  240
IKFQDNGSVF VKGFGSVFRR NNVTTADKMV IEVKKNGNNV AHILKVHIVR G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A6e-131311010104At1g16640
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15662LKLRKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013681381.11e-133PREDICTED: B3 domain-containing protein At5g60130-like isoform X2
RefseqXP_013710323.11e-133PREDICTED: B3 domain-containing protein At5g60130-like isoform X2
SwissprotQ9LVG12e-98Y5013_ARATH; B3 domain-containing protein At5g60130
TrEMBLA0A0D3ECZ61e-133A0A0D3ECZ6_BRAOL; Uncharacterized protein
STRINGscaffold_802655.11e-92(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49471843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60142.12e-51B3 family protein